CDS
| Accession Number | TCMCG007C43467 |
| gbkey | CDS |
| Protein Id | XP_009125224.2 |
| Location | join(17248652..17248750,17248880..17249177,17249263..17249470,17249556..17249889,17249964..17250080,17250154..17250282,17250352..17250546,17250635..17250829,17250935..17251072,17251173..17251295,17251372..17251625,17251726..17251829,17252055..17252149,17252237..17252461,17252798..17252977,17253049..17253121,17253218..17253285,17253425..17253570,17253663..17253771,17253847..17253993,17254091..17254138,17254213..17254341,17254516..17254758,17254835..17254966,17255052..17255137,17255232..17255337,17255521..17255616,17255732..17255884,17256032..17256214,17256290..17256519,17256617..17256710,17256792..17256920,17257006..17257050,17257242..17257436,17257704..17257830,17257914..17258014,17258252..17258389,17258467..17258550,17258912..17259058,17259145..17259276,17259374..17259421,17259512..17259658,17259731..17259792,17259934..17260087,17260168..17260359,17260436..17260540,17260626..17260760,17260837..17261295) |
| Gene | LOC103850259 |
| GeneID | 103850259 |
| Organism | Brassica rapa |
Protein
| Length | 2378aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA249065 |
| db_source | XM_009126976.3 |
| Definition | CCR4-NOT transcription complex subunit 1 isoform X1 [Brassica rapa] |
EGGNOG-MAPPER Annotation
| COG_category | K |
| Description | Domain of unknown function (DUF3819) |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko03019 [VIEW IN KEGG] |
| KEGG_ko |
ko:K12604
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03018
[VIEW IN KEGG] map03018 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGTCGATGATTCCGTCCAAGGTCGCCGTCCATACCCGGTACTTACTCGATAACTTCAATGATTCCGATGTCGACTCAATCGCCCAAGAGATCTGCCAGTTGGTTGATTATGGTGTTGAGGCAAGCATCCCTGTGCTCAAGACGTGCGTAGATTGCTTCACCGTCCGGAGAAGCCACGCTAATACGCTGCAGCTTGAGAAACTATTAGCCTTGGTCTTCAAACGTGTCCTCAAATTGCCTAATCTCGGAACCCTGCTTTCTCACGCACTCCAAGATGCTGACGTCACTCCTGAATTCGTTCGTGATTTGGCAACTGCTTTGGGCTTTTCAGTCTCTGATAAGATTACCTTTGCTCTTGCCCTGGTTGATTTTGAAACTTCTCATGCTAAGACTAGTGGACGAAACTTATTATTGGCGGAGATTGAGCAACTCTGTGCTAACAATGGCCAGGTTGAGTCAACTGAGCAAATTCAGAACGTTGTTTTGTTTCTTCAGACGTCCGAGGATCTCTCCGGGCATTTGGAGTCGTTCCTTCGGCTTCTGTCTTCCTCTCAACCTAGAGATGACTTGTCTTTTGCTCTTACGCCTCTCCTCTCTCCATTCAGGAGCATTGATTCTGCTGAGGACGACTTTGATGCTGTCCTAGCTGAAATCGATAAGGAAGTTGGTGTTGGAGATCTCATTGGAGAATTAGGCTGTGGTTTCACTGCTGATGCCCAACAATGCAAACACTTCTTGTCTAGTTTCGCACCCCTAAGAGAGGCTACTATCTCAAGAATTCTTGGTCATGTGGCTCGTACCTCTGCCGATCTTGAAGATAATCACACCACCTTTTCAACATTCAGTCTGGCCGTTGGTTGCTCCATTCCAACTGATCTGCCCACGCCAACGCCAACGTCGTGGAATGTTGATATCTTGATTGAAACAATCAAGCAGCTTCAGGCTCCTGGCACAAGCTGGAGGAAAGTAATCGAGAATCTCGACCATAGTGGATTTGACATCCCTAATATGGAGTCATTCTCGTTTTTCATGCGGCTATATAAAACTGCTTGCAAGGACCCATTTCCTCTTGATGCTGTATGTGCTTCTGTCTGGAACAATATGGAAGGTCAATTATCCTTTCTTAAACATGCAATAGCAGCTCCACCAGAAGTATTTACCTTTACGCATTCTCCAAGGAAGCTGGCATATATTGATAATATCATGCACAGCCATGAGCAACAATTAGGACTTTCCAATCAAGCATGGCTATCTCTTGATCTCTTAGATGTACTCTGCCAACTGGCGGAGAGAGGTCATACTGTTTTAGTTAGTTCGATGCTCCAGTATCCACTCACACATTGTCCTAAAACATTGCTTCTTGGAATGACTCACATCAAAACTGCCTATAATCTCATCCAGCGAGAGGTGGTATCTGTTATTCTTCCAGTGCTAATAACGAATTCCCAGGATAGTGGTTTCATTCTCAAGCTCTGGCATCAGAATGCTGAGCTCGTTCTGTGGGGGATTTTAAATGCCCAAAATCTTAAATCAGACGGCATACTCAGAATAATTGAAATCTTCCATGAGCTTAAGATTTTCTCTGTTGTTTTAGAATCAGTTCCAGTCTCATTCAGCATCAGATTGGCAGTCCTTGCCTCACTGAGAGGCTTTTTGGACATTGAGAACTGGTTGCCAAACTGTCTGTATGTGTATAAGGACCTCTTTGCTGAGGAGTGTCTCAAATTTGTCAAGAATGTGCATTTTAGCGAATCAGAGGATTTTACTTCCAAGCATTTTCATCCTTCGGATCCTTTATCAGATCGTCATTTGGATGCAACGACTTTGCTTTTGAAAGTTTTGAAAGCTCATGACAATGTGATTACTTCATCTCAACTAGTCGAAGAGATAGAAAAGGTCAATTCAGCAATCTTGGATTGTAATTCGAAACTGCAGAATGGGGAGGCTAAAGATTCCTCAGTTCCCAGTCCATACGGAGAAGATGTTGAGGAGGAAGCCAACGCTTATTTCCATCAAATGTTTTCCGGTCAGTTGAGTGTTGATGCAATGGTTCAAATGCTATCTCGATACAAGGACTCTTTGGTTCAAAGGGAAAAATCAATTTTTGAATGCATGATTGCTAATCTGTTCGAGGAGTATCGTTTTTTCCCCAAGTATCCCGAGAGGCAGCTGAAAATAGCCTCCGTCCTCTTTGGTTCTGTTATTAAGCACCAGCTTATTAGTTCCATCACACTGGGGATGGCACTGCGTCTAGTCTTGGATTCTTTGCGTAAGCCTGCAGATTCTAAAATGTTTCTGTTTGGAAGCAAAGCTCTGGAACAGTTCGTGAATCGTCTTGTTGAATTGCCTCAGTACTGCAACCATATTTTGCAAATATCTCACCTGCGTAGCACTCATCCCGAGTTAGTCACTGTTATTGAACAAGCACTTTCAAGGATATCATCTGGTAATTTGGAATCAGATGCTTCGTTTTCGCACCCTGGTCCTTCACAGTCTCTCCCTGGAAATGGCGAGTTTAGTGTTTCTGGAATTGGTCAGTCTCCACTCCAACTTCCTTCTCCTGTACAGCCTCAACAGAAAAATGAAGTGCATATTGATGACCACAGCAAAGTGCCAAGTGTGCCATCTATCGAAACAAAGCCACTTCTGCCCTCGTCATCTAGCACTTCTGCTGATGTTTCTGTCATTCCTAAGAATCCTGGCATTTCGACTTCTTCACTGACCTCAGCTGGTTTTGTTCGTCCAGCTCGTGGAGCCACATCAACGAGGTTTGGCTCTGCTTTGAACATAGAAACCCTGGTTGCAGCAGCAGAGAGAAGGGAAAACGCAATAGAGGCTCCACCTTCAGATGTCCAGGACAAAATATCTTTCATAATCAATAATATCTCTATAGCTAACATTGAATCTAAAGGGAAAGAGTTCGCTGAGATTTTATCTCAACAATACTATCCTTGGTTCGCACAGTATATGGTTATGAAAAGAGCGAGCATCGAGCCCAATTTTCACGATTTGTACTTGAAGTTCTTGGACAAAGTTGATTCCAAGCTGTTGTTTAAGGAGATACTCCAAAATACATACGAAAATTGCAAGGTTCTGTTGGGTTCAGAGCTCATAAAGTCAAGTTCTGAAGAGCGATCTCTGCTTAAAAATTTAGGCAGCTGGCTTGGAAAGTTAACGATTGGAAGGAATTATGTTTTAAGGGCGCGAGAAATTGATCCAAAATCCTTGATTGTGGAGGCGTATGAAAAAGGGTTGATGATAGCAGTCATTCCATTCACTTCGAAGGTTCTGGAGCCATGCCAAAACAGTATTGCGTATCAGCCTCCCAATCCTTGGACAATGGCTATACTCGGGTTGCTTGCTGAGATCTATTCGATGCCAAACCTAAAAATGAATCTGAAGTTTGACATAGAGGTTCTGTTCAAGAACCTTGGTGTTGATTTGAAAGAAGTAGTGCCAACTTCCCTTCTAAAGGATCGGAAGAGAGAAATAGACGGGAATCCTGATTTTAGTAACAAAGATCTTGGAGTAGCACATATATCTCAGTCCCAGATGATCTCGGAGCCTAAAACAATTTCTCCTCTTAAGCAAATAGATCTACCTCTTGATGTTGCAAATTCATCTAATACAGACGCTCCCTCGAAGTTATTATCACAGTATGTAGCCCCTCAACGTGCTTATACTAATACTTCGGTGGAAGACGAAAAAGTTGTAACTCTAGGCTTGTCTGATCAGCTCTCGTCCCCACAAGGACCGTTCCAGTCGACTCCACCCTTTTCTGTTAGCCAGCTGTCAGCAGCACTTCCGAACATTGGAAATCTTGTTGTTATCAATCAGAAATTAAGCGGATTTAGTAAGCACTTTCCATTTCAGAGAGTGGTACCACTTGCCATGGACAGAGCCATCAAGGAGATTGTGTCTGGTATTGTTCAGCGAAGTGTTTGTATTGCTTGCCAGACAACAAAAGAGCTTGTGCTCAAGGATTATGCCTCGGAACCAGATGAGACACGTATATATAATGCAGCTCACTTGATGGTTGCTAGTTTAGCTGGGAGTTTGGCTCATGTGACGTGCAAGGAACCCCTGCGCACTTCAATTTCGGGTCATCTACGTAATTCGCTACAGGGTCCGAATATTAATAATGAAGCTCTTGAACAAATTGTTCAACTTGTCACCAATGACAACCTTGATTTGGGTTGTGCTGCCATTGAGCAGGCGGCTACAGAGAAGGCAATACAAAATATTGATGCGGACATTGCCCATCAATTATCGTTGCGGAGAAAGCATAGAGATGGTGTTGGATCCTCCTTTTTTGATCCAAACATGCTAGCGCAAAATTCTGTCAGTTTTATACCTGAGTCCCTCAGCCCAAAACCGGGACAATTGTCCCTTTCTCAACAGCGAGTTTATGAGGACTTTGTTCAACATCCTTGGCAAAAGCAGTCAGCCCAAACTTCACACGGTTTATCCGTTGCTTCAAGCTCATCTGGCGATGTTGGGTTTGGTAATGGTTATGGTCCAGTATCAGGAAAAAATGCTTCGGACTTCGAGTCTAGTGCTGGAAATGATCGGACGGATATGGCCTACCGGGCATCAGATACTTCTATGGAGAGTTTTCAATCCTGTCCAATTTCACTTTTAAGCTCACAAGTTGATCCAGCAGCCGGTCTTCAATTCTCTAAATCCCTTTCGACATCTGAATTGAGCCTGGTTGAGTCCTCCGAGGCCGCTATGAAAGAAACTGGAACATCATTGCAAACGTTGACTCCAGCTGCTACCATGGAGCGTCTTATTGGAAATAATACCCCACAGCCTTCTCTGTCCACGAGAGATGCATTGGACAAGTATCATATTGTTACTCAGAAGATGGAGAACTTAGTGGCTAATAATGCAGGAGATGATGAAATTCAGGCTGTAGTTTCTGAAGTTCCTGAAATCATCCTCAGATGTATAAGCAGAGATGAAGCAGCTTTAGCTGTTGCTCAAAAAGCTTTCAAGGCTCTTTATGAGAATGCATCAAGTAACCTTCACATCAGTGCTAACCTAGCAATTCTTGTGGCTATTCGTGATGTTTGCAAGCGTGTTGTTAAAGAGCTCACTAGTTGGGTGATTTATTCAGACGAGGAACGGAAGCTCAACAAAGATATTACTATTGGTCTTATCCAACGCGAGTTGCTTAACCTAGCGGAGTACAATGTCCACATGGCGAAGCATCTTGATGGAGGGAGAAACAAGAGCGCCACTGACTTTTCTATTTCTCTACTCCAGTGCCTTGTCACTGAGAAGTCGAGTGTCATTTCAGAGCTACACAGCCTTGTTGATGCACTGGCCAAGCTTTCGGCAAAATCTGGATCTCCCGTCTCATTGCAACAACTCATTGACATCATACGAAATCCAGTTACTAACACAAGTGGTCTCAGTGATAGTGCAACTGAAAACGAGATCAATGATAGGCAATCAAAGGATGAAAAGGTTGTATGCAATACCATCGCTAACACAGAAGATAATACCAGCTTTGAATACGTGGAATCAGGCTCTACGGATTTCCGGAAACGGGTGTCCACGCTTTTTGAAAACTGGTATCAACTCTGCGAAGTTTCGGGTGCAAATGAAACCGCTTGTTCAGAATATGTCTTGCATTTGTATCAGACTGGACTTCTTAAGGGAGACGATACAACAGAGAGTTTTTTCAAAATTCTTCTGGAACTGTCTGTTGCTCATTGTATATCTTCTGAAGAAATTAGCTCTGGTGCTGCGCAATCTCCTCAGCAAGCTCAGAGTCCATCATTCCTCATCATCGATATTTTTGCAAAGCTTGTTTTTTCGATCTTGAAGTATTTCCCTGAACAAGAGTCTAGCAGCAAGTTTTTTCTTCTGTCGGAGATCATGGCTGTCACTGTGAGATCTATTCAAAAGGACGCAGAAGATAAAAAGGCATCACTCAGTCCAAGACCATATTTTAGATTGTTCATCAACTGGCTGCTGGACTTATGTTCCCTGGATCCTGGGACTGATGGTGCAAACTTTCAGGTTCTAACAGCTTTTGCTAATGCATTCCACGCATTGCAGCCTTTGAAGATTCCCGCTTTCAGCTTTGCATGGCTAGAGCTGGTCAGCCACAGAAGCTTCTTGCCCAAGCTACTTACAGTAAATGGACAGAAGGGCTGGCCATATGTTCAACGCCTGCTGGTAGACTTACTCCAGTTTCTTGAGCCATTTTTGAGAAATGCGGAACTCGGAGGACCGGTTCATATCCTATATAAGGGGACGCTGAGAGTGTTGCTGGTGCTGCTTCATGACTTCCCGGAGTTCCTCTGCGATTATCATTTTACTTTCTGTGATGTGATTCCTTCAAGTTGCGTACAAATGCGAAATATTATACTAAGTTCTTTTCCACGGAACATGAGGCTTCCAGACCCATCTACCCCAAATTTAAAGATTGATTTGCTGCCTGAGATAGTAGAAGCTCCGTGTATCCTATCTGAGGTTGATGCTGCGCTAAAAGCAAATCAAATGAAGAATGACGTGGAAGAGTATCTCACTTCGAGGCAACATGATACAACTTTCCTAAATGAGTTGAAGCTGAAGCTACTTGTCTCGTCCAGCGAGGCTAGTTCAGCTGGAACTCGTTACAATGTACCATTGATCAACTCGCTTGTGTTATATACTGGAATGCAGGCTATTCAGCAGCTACAACAGGCGGGAGAGACAGGGGCTCAAAATGTGGTGGCCTTGCATATGTTCAAGTATTTAAGTGCGGAACTTGACACGGAAGGGCGGTATCTGTTCCTAAATGCAATCGCCAATCAGCTTCGATATCCAAACAACCACACTCATTACTTCTCCTTCATCATGCTCTATCTCTTCTTGGAGTCTGACCAGGTGGTCATACAGGAGCAGATAACAAGAGTGTTGCTGGAAAGGCTAATTGTGAACAGGCCGCATCCATGGGGACTCCTGATAACATTCATAGAGCTCATAAAGAATCCAAGGTATGGCTTCTGGAAACATGGCTTCATCAGGTGTGCTCCTGAGATTGAGAAACTCTTTGAATCGGTGGCCAGATCATGTGGTTGTCTCAAGCCCCTTGACGAGGGAATTGTCTCCGCCGGTTGGGTCTCGGAAAACTCTCATTAG |
| Protein: MSMIPSKVAVHTRYLLDNFNDSDVDSIAQEICQLVDYGVEASIPVLKTCVDCFTVRRSHANTLQLEKLLALVFKRVLKLPNLGTLLSHALQDADVTPEFVRDLATALGFSVSDKITFALALVDFETSHAKTSGRNLLLAEIEQLCANNGQVESTEQIQNVVLFLQTSEDLSGHLESFLRLLSSSQPRDDLSFALTPLLSPFRSIDSAEDDFDAVLAEIDKEVGVGDLIGELGCGFTADAQQCKHFLSSFAPLREATISRILGHVARTSADLEDNHTTFSTFSLAVGCSIPTDLPTPTPTSWNVDILIETIKQLQAPGTSWRKVIENLDHSGFDIPNMESFSFFMRLYKTACKDPFPLDAVCASVWNNMEGQLSFLKHAIAAPPEVFTFTHSPRKLAYIDNIMHSHEQQLGLSNQAWLSLDLLDVLCQLAERGHTVLVSSMLQYPLTHCPKTLLLGMTHIKTAYNLIQREVVSVILPVLITNSQDSGFILKLWHQNAELVLWGILNAQNLKSDGILRIIEIFHELKIFSVVLESVPVSFSIRLAVLASLRGFLDIENWLPNCLYVYKDLFAEECLKFVKNVHFSESEDFTSKHFHPSDPLSDRHLDATTLLLKVLKAHDNVITSSQLVEEIEKVNSAILDCNSKLQNGEAKDSSVPSPYGEDVEEEANAYFHQMFSGQLSVDAMVQMLSRYKDSLVQREKSIFECMIANLFEEYRFFPKYPERQLKIASVLFGSVIKHQLISSITLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASFSHPGPSQSLPGNGEFSVSGIGQSPLQLPSPVQPQQKNEVHIDDHSKVPSVPSIETKPLLPSSSSTSADVSVIPKNPGISTSSLTSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKISFIINNISIANIESKGKEFAEILSQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEILQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKSLIVEAYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFKNLGVDLKEVVPTSLLKDRKREIDGNPDFSNKDLGVAHISQSQMISEPKTISPLKQIDLPLDVANSSNTDAPSKLLSQYVAPQRAYTNTSVEDEKVVTLGLSDQLSSPQGPFQSTPPFSVSQLSAALPNIGNLVVINQKLSGFSKHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQTTKELVLKDYASEPDETRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSLQGPNINNEALEQIVQLVTNDNLDLGCAAIEQAATEKAIQNIDADIAHQLSLRRKHRDGVGSSFFDPNMLAQNSVSFIPESLSPKPGQLSLSQQRVYEDFVQHPWQKQSAQTSHGLSVASSSSGDVGFGNGYGPVSGKNASDFESSAGNDRTDMAYRASDTSMESFQSCPISLLSSQVDPAAGLQFSKSLSTSELSLVESSEAAMKETGTSLQTLTPAATMERLIGNNTPQPSLSTRDALDKYHIVTQKMENLVANNAGDDEIQAVVSEVPEIILRCISRDEAALAVAQKAFKALYENASSNLHISANLAILVAIRDVCKRVVKELTSWVIYSDEERKLNKDITIGLIQRELLNLAEYNVHMAKHLDGGRNKSATDFSISLLQCLVTEKSSVISELHSLVDALAKLSAKSGSPVSLQQLIDIIRNPVTNTSGLSDSATENEINDRQSKDEKVVCNTIANTEDNTSFEYVESGSTDFRKRVSTLFENWYQLCEVSGANETACSEYVLHLYQTGLLKGDDTTESFFKILLELSVAHCISSEEISSGAAQSPQQAQSPSFLIIDIFAKLVFSILKYFPEQESSSKFFLLSEIMAVTVRSIQKDAEDKKASLSPRPYFRLFINWLLDLCSLDPGTDGANFQVLTAFANAFHALQPLKIPAFSFAWLELVSHRSFLPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHILYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPSSCVQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCILSEVDAALKANQMKNDVEEYLTSRQHDTTFLNELKLKLLVSSSEASSAGTRYNVPLINSLVLYTGMQAIQQLQQAGETGAQNVVALHMFKYLSAELDTEGRYLFLNAIANQLRYPNNHTHYFSFIMLYLFLESDQVVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKHGFIRCAPEIEKLFESVARSCGCLKPLDEGIVSAGWVSENSH |